- Class: 3
- Architecture: 3.30:2-Layer Sandwich
- Topology: 3.30.280:Urease; subunit A
- Homology: 3.30.280.10:Urease, gamma-like subunit
PDB Entries
PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | |||
---|---|---|---|---|---|---|---|---|
Amino Acid sequence | SCOPe Family Level | CATH Homology Level | ||||||
1a5k | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2.2 | ||||
1a5l | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2.2 | ||||
1a5m | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2 | ||||
1a5n | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2.4 | FMT:FORMIC ACID NI:NICKEL (II) ION | |||
1a5o | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2.5 | FMT:FORMIC ACID NI:NICKEL (II) ION | |||
1e9y | [A12B12] | [A12B12] | [A12B12] | 3 | HAE:ACETOHYDROXAMIC ACID KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
1e9z | [A12B12] | [A12B12] | [A12B12] | 3 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
1ef2 | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2.5 | KCX:LYSINE NZ-CARBOXYLIC ACID MN:MANGANESE (II) ION | |||
1ejr | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
1ejs | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
1ejt | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
1eju | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
1ejv | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2.4 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
1ejw | [A3B3C3] | [A3B3C3] | [A3B3C3] | 1.9 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
1ejx | [A3B3C3] | [A3B3C3] | [A3B3C3] | 1.6 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
1fwa | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2 | CO3:CARBONATE ION KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
1fwb | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
1fwc | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
1fwd | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
1fwe | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2 | HAE:ACETOHYDROXAMIC ACID KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
1fwf | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
1fwg | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
1fwh | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
1fwi | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
1fwj | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2.2 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
1ie7 | [ABC] | [ABC] | [ABC] | 1.85 | CXM:N-CARBOXYMETHIONINE KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION PO4:PHOSPHATE ION | |||
1kra | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2.3 | ||||
1krb | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2.5 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
1krc | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2.5 | CO2:CARBON DIOXIDE NI:NICKEL (II) ION | |||
1s3t | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2.1 | BO3:BORIC ACID CXM:N-CARBOXYMETHIONINE KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION SO4:SULFATE ION | |||
1ubp | [A3B3C3] | [A3B3C3] | [A3B3C3] | 1.65 | BME:BETA-MERCAPTOETHANOL CXM:N-CARBOXYMETHIONINE KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
2fvh | [A3] | [A3] | [A3] | 1.8 | ||||
2kau | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
2ubp | [ABC] | [ABC] | [ABC] | 2 | ACE:ACETYL GROUP KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION SO4:SULFATE ION | |||
3la4 | [A6] | [A6] | [A6] | 2.05 | ACN:ACETONE CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION PO4:PHOSPHATE ION | |||
3qga | [A12B12] | [A12B12] | [A12B12] | 3 | FE:FE (III) ION FME:N-FORMYLMETHIONINE KCX:LYSINE NZ-CARBOXYLIC ACID | |||
3qgk | [A12B12] | [A12B12] | [A12B12] | 3 | FE:FE (III) ION FME:N-FORMYLMETHIONINE KCX:LYSINE NZ-CARBOXYLIC ACID | |||
3ubp | [ABC] | [ABC] | [ABC] | 2 | 2PA:DIAMIDOPHOSPHATE ACE:ACETYL GROUP KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
4ac7 | [A3B3C3] | [A3B3C3] | [A3B3C3] | 1.5 | CXM:N-CARBOXYMETHIONINE EDO:1,2-ETHANEDIOL FLC:CITRATE ANION KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION OH:HYDROXIDE ION SO4:SULFATE ION | |||
4ceu | [A3B3C3] | [A3B3C3] | [A3B3C3] | 1.58 | CXM:N-CARBOXYMETHIONINE EDO:1,2-ETHANEDIOL KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION OH:HYDROXIDE ION SO4:SULFATE ION | |||
4cex | [A3B3C3] | [A3B3C3] | [A3B3C3] | 1.59 | CXM:N-CARBOXYMETHIONINE EDO:1,2-ETHANEDIOL F:FLUORIDE ION KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION SO4:SULFATE ION | |||
4ep8 | [A3B3C3] | [A3B3C3] | [A3B3C3] | 1.55 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
4epb | [A3B3C3] | [A3B3C3] | [A3B3C3] | 1.75 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
4epd | [A3B3C3] | [A3B3C3] | [A3B3C3] | 1.7 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
4epe | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2.05 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
4fur | [A3] | [A3] | [A3] | 2.1 | CL:CHLORIDE ION EDO:1,2-ETHANEDIOL | |||
4g7e | [A3B3] | [A3B3] | [A6] | 2.2 | CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE KCX:LYSINE NZ-CARBOXYLIC ACID MG:MAGNESIUM ION NI:NICKEL (II) ION | |||
4goa | [A6] | [A6] | [A6] | 2.2 | CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE F:FLUORIDE ION KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
4gy7 | [A3] | [A3] | [A3] | 1.49 | ACN:ACETONE BME:BETA-MERCAPTOETHANOL CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE EDO:1,2-ETHANEDIOL KCX:LYSINE NZ-CARBOXYLIC ACID NA:SODIUM ION NI:NICKEL (II) ION PO4:PHOSPHATE ION | |||
4h9m | [A3] | [A3] | [A3] | 1.52 | CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE EDO:1,2-ETHANEDIOL HAE:ACETOHYDROXAMIC ACID KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
4ubp | [ABC] | [ABC] | [ABC] | 1.55 | ACE:ACETYL GROUP HAE:ACETOHYDROXAMIC ACID KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
4z42 | [A12B12C12] | [A12B12C12] | [A12B12C12] | 3.01 | NI:NICKEL (II) ION | |||
5a6t | [A3B3C3] | [A3B3C3] | [A3B3C3] | 1.65 | CXM:N-CARBOXYMETHIONINE EDO:1,2-ETHANEDIOL KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION SO3:SULFITE ION SO4:SULFATE ION | |||
5fsd | [A3B3C3] | [A3B3C3] | [A3B3C3] | 1.75 | CXM:N-CARBOXYMETHIONINE DBX:2,5-DIHYDROXYBENZENESULFONIC ACID EDO:1,2-ETHANEDIOL KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION OH:HYDROXIDE ION SO4:SULFATE ION | |||
5fse | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2.07 | CXM:N-CARBOXYMETHIONINE EDO:1,2-ETHANEDIOL HQE:BENZENE-1,4-DIOL KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION OH:HYDROXIDE ION SO4:SULFATE ION | |||
5g4h | [A3B3C3] | [A3B3C3] | [A3B3C3] | 1.5 | CAQ:CATECHOL CXM:N-CARBOXYMETHIONINE EDO:1,2-ETHANEDIOL KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION OH:HYDROXIDE ION SO4:SULFATE ION | |||
5ol4 | [A3B3C3] | [A3B3C3] | [A3B3C3] | 1.28 | 9XN:PHOSPHORAMIDOTHIOIC O,O-ACID CXM:N-CARBOXYMETHIONINE EDO:1,2-ETHANEDIOL KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION SO4:SULFATE ION | |||
6g48 | [A3B3C3] | [A3B3C3] | [A3B3C3] | 1.91 | AG:SILVER ION CXM:N-CARBOXYMETHIONINE EDO:1,2-ETHANEDIOL KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION OH:HYDROXIDE ION SO4:SULFATE ION | |||
6i9y | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2.14 | AU:GOLD ION CXM:N-CARBOXYMETHIONINE EDO:1,2-ETHANEDIOL KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION OH:HYDROXIDE ION SO4:SULFATE ION |
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA